This page provides scripts of HomeoRoq, which allows us to quantify ratios of homeolog expression levels in allopolyploid species, and links to genome sequences and raw reads of A. halleri subsp. gemmifera and A. lyrata subsp. petraea. Both of them are published in the paper ''Genome-wide quantification of homeolog expression ratio revealed non-stochastic gene regulation in synthetic allopolyploid Arabidopsis,'' written by Satoru Akama, Rie Shimizu-Inatsugi, Kentaro K. Shimizu and Jun Sese.
Genome sequences and gene annotations of Arabidopsis halleri and lyrata
- A. halleri subsp. gemmifera (from ENA)
- A. lyrata subsp. petraea (from ENA)
Raw reads of the A. halleri and lyrata genomes
- Both DNA sequences include 200bp, 500bp and 800bp insert libraries.
- akama_AT_ss.cs.titech.ac.jp and sesejun_AT_cs.titech.ac.jp